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  • Macaca_fascicularis - Ensembl genome browser 115
    Genome assembly: Macaca_fascicularis_6 0 (GCA_011100615 1) More information and statistics Download DNA sequence (FASTA) Display your data in Ensembl Other assemblies Macaca_fascicularis_5 0 (Ensembl release 102)
  • Index of goldenPath macFas5 bigZips - UCSC
    This directory contains the Jun 2013 (Macaca_fascicularis_5 0 macFas5) assembly of the crab-eating macaque genome (macFas5, Washington University (WashU) GCA_000364345 1),
  • macFas5 Non-Crab-eating macaque RefSeq Gene
    Summary of CD84 This gene encodes a membrane glycoprotein that is a member of the signaling lymphocyte activation molecule (SLAM) family This family forms a subset of the larger CD2 cell-surface receptor Ig superfamily The encoded protein is a homophilic adhesion molecule that is expressed in numerous immune cells types and is involved in regulating receptor-mediated signaling in those cells
  • Crab-eating macaque [ Macaca fascicularis ] Genomic Dataset
    Interspersed Repeats Masked: 48 55 % Total Masked: 51 57 % ( Including simple tandem repeats, satellite DNA, and low complexity regions ) WindowMasker Comparison Genome Size ( no Ns ): 2803866385 bp WindowMasker Masked: 0 00 % Downloads: macFas5 - Jun 2013 - RepeatMasker open-4 0 5 - Repeat Library 20140131 Downloads macFas5 fa out gz macFas5
  • Improved Macaca fascicularis gene annotation reveals evolution of gene . . .
    For M fascicularis, all 57 RNA-seq datasets were aligned to Macaca_fascicularis_5 0 (macFas5, downloaded from UCSC genome browser) with RefSeq annotation via spliced aligner HISAT2 (version 2 0 4) [48] with default parameters
  • BSgenome. Mfascicularis. UCSC. macFas5-seed - GitHub
    Description: Full genome sequences for Macaca fascicularis as provided by (macFas5, Washington University (WashU) GCA_000364345 1) and stored in Biostrings objects
  • Genome Warehouse - National Genomics Data Center
    Scientific Name Macaca fascicularis Common Names crab eating macaque, cynomolgus macaque, cynomolgus monkey, cynomolgus monkeys, long-tailed macaque; crab-eating macaque; Macaca cynomolgus, Macaca irus Bioproject PRJDB9269 Biosample SAMD00204697 Accession No GCA_012559485 3 RefSeq Accession No GCF_012559485 2 RefSeq vs GenBank similarity different Source NCBI External Links NCBI Submitter
  • Index of goldenPath macFas5 bigZips genes - UCSC
    - 2020-09-01 12:58 12M 2020-01-10 09:35 18M 2020-01-10 09:35 567K
  • Index of goldenPath macFas5 liftOver - UCSC
    rsync -avzP rsync: hgdownload soe ucsc edu goldenPath macFas5 liftOver macFas5ToHg19 over chain gz (Hg19 is merely an example here, not necessarily existing ) Or with wget, all files: wget --timestamping 'ftp: hgdownload soe ucsc edu goldenPath macFas5 liftOver *' With wget, a single file: wget --timestamping
  • Index of goldenPath hg38 vsMacFas5 - UCSC
    The hg38 and macFas5 assemblies were aligned by the blastz alignment program, which is available from Webb Miller's lab at Penn State University (http: www bx psu edu miller_lab ) Any hg38 sequences larger than 40,010,000 bases were split into chunks of 40,010,000 bases overlapping by 10,000 bases for alignment





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